Fidelis, Krzysztof: search on Z-Library

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1

Critical assessment of methods of protein structure prediction (CASP) - round x

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 103 KB

english, 2014

2

Critical assessment of methods of protein structure prediction (CASP)-round V

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 69 KB

english, 2003

3

Critical assessment of methods of protein structure prediction—Round VIII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 71 KB

english, 2009

4

Critical assessment of methods of protein structure prediction (CASP)—round IX

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

5

Processing and analysis of CASP3 protein structure predictions

Adam Zemla, Česlovas Venclovas, John Moult, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 316 KB

english, 1999

6

Critical assessment of methods of protein structure prediction (CASP) - progress and new directions in Round XI

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 646 KB

english, 2016

7

Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round XII

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

8

Critical assessment of methods of protein structure prediction (CASP)—Round 6

John Moult, Krzysztof Fidelis, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 66 KB

english, 2005

9

A large-scale experiment to assess protein structure prediction methods

John Moult, Jan T. Pedersen, Richard Judson, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 325 KB

english, 1995

10

Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules

Helen M. Berman, Stephen K. Burley, Wah Chiu, Andrej Sali, Alexei Adzhubei, Philip E. Bourne, Stephen H. Bryant, Roland L. Dunbrack Jr., Krzysztof Fidelis, Joachim Frank, Adam Godzik, Kim Henrick, And

Journal:

Year:

2006

Language:

english

File:

PDF, 162 KB

english, 2006

11

Criteria for evaluating protein structures derived from comparative modeling

Česlovas Venclovas, Adam Zemla, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 357 KB

english, 1997

12

Small Angle X-ray Scattering for Data-Assisted Structure Prediction in CASP12 with Prospects to Improve Accuracy

Ogorzalek, Tadeusz L., Hura, Greg L., Kryshtafovych, Andriy, Tainer, John A., Fidelis, Krzysztof, Tsutakawa, Susan E.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 61 KB

english, 2018

13

Protein structure prediction and model quality assessment

Andriy Kryshtafovych, Krzysztof Fidelis

Journal:

Drug Discovery Today

Year:

2009

Language:

english

File:

PDF, 396 KB

english, 2009

14

Critical assessment of methods of protein structure prediction (CASP): Round III

John Moult, Tim Hubbard, Krzysztof Fidelis, Jan T. Pedersen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 61 KB

english, 1999

15

Protein structure prediction center in CASP8

Andriy Kryshtafovych, Oleh Krysko, Pawel Daniluk, Zinovii Dmytriv, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 205 KB

english, 2009

16

Using local gene expression similarities to discover regulatory binding site modules

Bartek Wilczyński, Torgeir R Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 687 KB

english, 2006

17

A Sliding Clamp Model for the Rad1 Family of Cell Cycle Checkpoint Proteins

Michael P Thelen, Česlovas Venclovas, Krzysztof Fidelis

Journal:

Year:

1999

Language:

english

File:

PDF, 223 KB

english, 1999

18

Generalized modeling of enzyme–ligand interactions using proteochemometrics and local protein substructures

Helena Strömbergsson, Andriy Kryshtafovych, Peteris Prusis, Krzysztof Fidelis, Jarl E. S. Wikberg, Jan Komorowski, Torgeir R. Hvidsten

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 527 KB

english, 2006

19

Confronting the problem of interconnected structural changes in the comparative modeling of proteins

Ram Samudrala, Jan T. Pedersen, Huai-bei Zhou, Rui Luo, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 870 KB

english, 1995

20

Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space

Strömbergsson, Helena, Daniluk, Pawel, Kryshtafovych, Andriy, Fidelis, Krzysztof, Wikberg, Jarl E. S., Kleywegt, Gerard J., Hvidsten, Torgeir R.

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 2.90 MB

english, 2008

21

Assessment of progress over the CASP experiments

C̆eslovas Venclovas, Adam Zemla, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 993 KB

english, 2003

22

Critical assessment of methods of protein structure prediction—Round VII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 114 KB

english, 2007

23

The Significance of Performance Ranking in CASP—Response to Marti-Renom et al.

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard, Anna Tramontano

Journal:

Year:

2002

Language:

english

File:

PDF, 31 KB

english, 2002

24

Comparison of systematic search and database methods for constructing segments of protein structure

Fidelis, Krzysztof, Stern, Peter S., Bacon, David, Moult, John

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 778 KB

english, 1994

25

Numerical criteria for the evaluation of ab initio predictions of protein structure

Zemla, Adam, Venclovas, Česlovas, Reinhardt, Astrid, Fidelis, Krzysztof, Hubbard, Tim J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 731 KB

english, 1997

26

Outcome of a Workshop on Applications of Protein Models in Biomedical Research

Torsten Schwede, Andrej Sali, Barry Honig, Michael Levitt, Helen M. Berman, David Jones, Steven E. Brenner, Stephen K. Burley, Rhiju Das, Nikolay V. Dokholyan, Roland L. Dunbrack Jr., Krzysztof Fideli

Journal:

Year:

2009

Language:

english

File:

PDF, 249 KB

english, 2009

27

CASP10 results compared to those of previous CASP experiments

Kryshtafovych, Andriy, Fidelis, Krzysztof, Moult, John

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 818 KB

english, 2014

28

Progress from CASP6 to CASP7

Andriy Kryshtafovych, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.21 MB

english, 2007

29

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

Torgeir R. Hvidsten, Andriy Kryshtafovych, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 571 KB

english, 2009

30

New encouraging developments in contact prediction: Assessment of the CASP11 results

Monastyrskyy, Bohdan, D'Andrea, Daniel, Fidelis, Krzysztof, Tramontano, Anna, Kryshtafovych, Andriy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

31

Processing and evaluation of predictions in CASP4

Adam Zemla, Česlovas Venclovas, John Moult, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 3.68 MB

english, 2001

32

Assessment of model accuracy estimations in CASP12

Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Fidelis, Krzysztof, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 3.80 MB

english, 2017

33

Some measures of comparative performance in the three CASPs

Česlovas Venclovas, Adam Zemla, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 320 KB

english, 1999

34

Comparison of performance in successive CASP experiments

Česlovas Venclovas, Adam Zemla, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 2.80 MB

english, 2001

35

Crystallographic, Molecular Modeling, and Biophysical Characterization of the Valine β67 (E11) → Threonine Variant of Hemoglobin †,‡

Pechik, Igor, Ji, Xinhua, Fidelis, Krzysztof, Karavitis, Michael, Moult, John, Brinigar, William S., Fronticelli, Clara, Gilliland, Gary L.

Journal:

Year:

1996

Language:

english

File:

PDF, 498 KB

english, 1996

36

Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)

Kryshtafovych, Andriy, Albrecht, Reinhard, Baslé, Arnaud, Bule, Pedro, Caputo, Alessandro T., Carvalho, Ana Luisa, Chao, Kinlin L., Diskin, Ron, Fidelis, Krzysztof, Fontes, Carlos M.G.A., Fredslund, F

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

37

Critical assessment of methods of protein structure prediction (CASP): Round IV

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 66 KB

english, 2001

38

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL

Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 825 KB

english, 2014

39

Cover Image, Volume 84, Issue S1

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

File:

PDF, 526 KB

2016

40

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

Ogorzalek, Tadeusz L., Hura, Greg L., Belsom, Adam, Burnett, Kathryn H., Kryshtafovych, Andriy, Tainer, John A., Rappsilber, Juri, Tsutakawa, Susan E., Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.79 MB

english, 2018

41

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment

Adam Zemla, Česlovas Venclovas, Krzysztof Fidelis, Burkhard Rost

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 100 KB

english, 1999

42

Evaluation of model quality predictions in CASP9

Andriy Kryshtafovych, Krzysztof Fidelis, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011

43

Synthesis and antiarrhythmic properties of novel 3-selena-7-azabicyclo[3.3.1]nonanes and derivatives. Single-crystal x-ray diffraction analysis of 7-benzyl-3-selena-7-azabicyclo[3.3.1]nonan-9-one and 7-benzyl-3-selena-7-azabicyclo[3.3.1]nonane hydroperchlorate

Thompson, M. Daniel, Smith, Gary S., Berlin, K. Darrell, Holt, Elizabeth M., Scherlag, Benjamin J., Van der Helm, Dick, Muchmore, Steven W., Fidelis, Krzysztof A.

Journal:

Journal of Medicinal Chemistry

Year:

1987

Language:

english

File:

PDF, 1.26 MB

english, 1987

44

Cover Image, Volume 84, Issue S1

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

File:

PDF, 329 KB

2016

45

Protein Structure Prediction Assisted with Sparse NMR Data in CASP13

Sala, Davide, Huang, Yuanpeng Janet, Cole, Casey A., Snyder, David, Liu, Gaohua, Ishida, Yojiro, Swapna, G.V.T., Brock, Kelly P., Sander, Chris, Fidelis, Krzysztof, Kryshtafovych, Andriy, Inouye, Masa

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.26 MB

english, 2019

46

SYNTHESIS AND SINGLE CRYSTAL X-RAY DIFFRACTION CHARACTERIZATION OF [2-AMINO-N-(2,6-DIMETHYLPHENYL)-ACETAMIDATO-N 2 ] DICHLOROETHYLSELENIUM, A SELENIUM-CONTAINING LIDOCAINE MIMIC

Thompson, M. Daniel, Berlin, K. Darrell, Smith, Gary S., van der Helm, Dick, Muchmore, Steve W., Fidelis, Krzysztof A.

Journal:

Organic Preparations and Procedures International

Year:

1986

Language:

english

File:

PDF, 385 KB

english, 1986

47

Assessment of chemicalâcrosslinkâassisted protein structure modeling in CASP13

Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, KarczyÅska, Agnieszka S., Kryshtafo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2020

File:

PDF, 267 KB

2020

48

CASP9 results compared to those of previous casp experiments

Andriy Kryshtafovych, Krzysztof Fidelis, John Moult

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.37 MB

english, 2011

49

Critical assessment of methods of protein structure prediction (CASP): Round II

Moult, John, Hubbard, Tim, Bryant, Stephen H., Fidelis, Krzysztof, Pedersen, Jan T.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 35 KB

english, 1997

50

Assessment of the assessment: Evaluation of the model quality estimates in CASP10

Kryshtafovych, Andriy, Barbato, Alessandro, Fidelis, Krzysztof, Monastyrskyy, Bohdan, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

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